Installation

5PSeq Explorer was written in R and is hosted on ScilifeLab Serve. This application runs entirely inside a Docker container.

Requirements

  • Docker

Quick start

  1. Install Docker Desktop
    Windows & Mac: https://www.docker.com/products/docker-desktop/

  2. Open PowerShell or Command Prompt (Windows), or Terminal (Mac), and type:

Web version (with data hosted on our laboratory server)

docker pull stevensirene/fivepseq-explorer:v1.7
docker run -d -p 3838:3838 stevensirene/fivepseq-explorer:v1.7

For Mac, please use flag ‘–platform=linux/amd64’

docker run --platform=linux/amd64 -d -p 3838:3838 stevensirene/fivepseq-explorer:v1.7 

Plug-and-play 5PSeq Explorer-local version (please use with Data freeze- see Data)

docker pull stevensirene/5pseq-explorer-local:v1.0
docker run -d -p 3838:3838 stevensirene/5pseq-explorer-local:v1.0

For Mac, please use flag ‘–platform=linux/amd64’

docker run --platform=linux/amd64 -d -p 3838:3838 stevensirene/fivepseq-explorer:v1.7 

  1. Open your browswer and go to:

http://localhost:3838

  1. You should now see the 5PSeq Explorer interface

image